Thursday 12 November 2015

LAB 5: Determination of Antimicrobial Effects of Microbial Exracts

INTRODUCTION

               An antimicrobial is an agent that kills microorganisms or inhibits their growth. Antimicrobial medicines can be grouped according to the microorganisms they act primarily against. For example, antibacterial are used against bacteria and antifungals are used against fungi. A wide array of antimicrobial classes that are used for animal health and production are also used for human treatments. Those antimicrobials genes that propagate from the use of antibiotics for animal populations may spread and eventually hurt the efficacy of these same antibiotic when they are used to treat people.
               While all antimicrobial is a potential human health hazard, the preserved efficacy of some human medicine antibiotics is of higher priority. Antimicrobial resistance is only a threat to public health when humans are infected with a resistant organism that is difficult or impossible to treat. This is an issue seen more frequently with human pathogens transmitted between humans (such as extremely drug resistant tuberculosis, also called XDRTB, and MRSA). While outbreaks of resistant foodborne pathogens have been reported, very few have been epidemiologically traced back to the farm. Even fewer have been specifically associated with a specific indication such as increased rate of gain or prevention of a particular disease.
             Bacteriocins comprise a large and diverse group of ribosomally synthesized antimicrobial proteins or peptides. Although bacteriocins can be found in numerous Gram-positive and Gram-negative bacteria, those produced by lactic acid bacteria (LAB) have received special attention in recent years due to their potential application in the food industry as natural biopreservatives. Different classes of LAB bacteriocins have been identified on the basis of biochemical and genetic characterization. These bacteriocins have been reported to inhibit the growth of Listeria monocyotogenes, Staphylococcus aureus, Enterococcus faecalis and Clostridium tyrobutyricum.

Materials and reagents
·         MRS broth
·         Sterile filter paper disk
·         Forceps
·         Sterile universal bottles
·         Cultures of LAB and spoilage/pathogenic organisms
·         Bench-top refrigerated centrifuge
·         Incubator 30oc and 37oc
·         UV/V is spectrophotometer
·         Distilled deionized water
·         Trypticase soy agar
·         Brain heart infusion agar
·         Yeast extract

Procedure

Part I: Determination of bacteriocin activity via agar diffusion test
1.      Three petri dishes were labelled for each group.
2.      A petri dish was shared between two person.
3.      Each petri dish was divided into four parts and each side for one replicate.
4.      A strain of pathogen (Staphylococcus aureus) and a strain of lactic acid bacteria (LAB) were used in this experiment.

5.      10 ml of trypticase soy-yeast extract agar (TSAYE) was added into each labelled petri dish and the petri dish was moved in “8 shape” on the work surface to ensure the agar was distributed evenly.
6.      The petri dish was left aside for solidification.
7.      2 ml of pathogen (Staphylococcus aureus) was innoculated into 10 ml of brain heart infusion (BHI) agar.
8.      The innoculation process must be carried out quickly to avoid solidification of BHI agar.
9.      The mixture is then loaded on top of the TSAYE agar layer and the petri dish was moved in “8 shape” on the work surface to ensure the agar was distributed evenly.
10.  The petri dish was left aside for solidification.
11.  50 ml of broth containing LAB cultures was centrifuged at 3500rpm for 10 minutes. The supernatants will be used as extracellular extracts.
12.  The forceps were held by its handle and the tip of the forceps were heated with the flame of a Bunsen burner.
13.  A sterile filter paper disk was aseptically picked up using sterile forceps.
14.  The paper disk was then dipped into Lactobacillus Fermentum containing extracellular extracts. The excess extract was drained off completely.
15.  The paper disk was placed on top of the solidified BHI agar.
16.  The petri dishes were incubated for one day at 37°C.
17.  Upon incubation, the inhibition zones were measured (in cm) and the readings were recorded.

Part II: Determination of bacteriocin activity via optical density
1.      Universal bottles were prepared.
2.      Each of the universal bottle was labelled with 0x, 2x, 10x, 50x ,100x and control.
3.    Lactobacillus Plantarum was mixed with MRS to be diluted to final volume of 5 ml in each universal bottle labelled. The volume of the Lactobacillus Plantarum and MRS needed for each universal bottle is shown as below:

0x
2x
10x
50x
100x
control
Volume of Lactobacillus Plantarum (ml)
5.0
2.5
0.5
0.1
0.05
0
Volume of MRS (ml)
0
2.5
4.5
4.9
4.95
5.0
Total (ml)
5.0
5.0
5.0
5.0
5.0
5.0

4.     Each of the mixture was then added with 5 ml of MRS and 1 ml of pathogen Escherichia coli (E.coli).
5.      The universal bottles were then incubated for 12-15 hours at 37°C.
6.    Upon incubation, the optical density of the pathogenic bacteria in each universal bottle was measured at 600 nm using spectrophotometer.




Results:
Part 1: Determination of bacteriocin activity via agar diffusion test.
Strains of LAB: Lactobacillus plantarum

Strain of LAB
Strain of pathogenic bacteria
Inhibition zone (cm)



Lactobacillus Fermentum



Staphylococcus aureus
Diamater1 (cm)
Diameter 2 (cm)
Average diameter (cm)
0.95
0.80
0.88
0.60
0.70
0.65
0.73
0.76
0.75
0.65
0.64
0.65
0.52
0.45
0.49
0.50
0.30
0.40






Part II: Determination of bacteria activity via optical density


Dilutions
OD600 of spoilage/ pathogenic bacteria
Strain 1 : E.coli
0x
0.254
2x
0.384
10x
0.351
50x
0.349
100x
0.428
Equation
y=0.00098x+0.33
OD600 of control
0.1370
50% of OD600
0.0685
AU/ ml
-266.84



DISCUSSION

Part 1: Determination Of Bacteriocin Activity Via Agar Diffusion Test

1.      Bacteriocin are proteinaceous toxins produced by bacteria to inhibit the growth of microorganisms such as fungi, protozoans and similar or closely related bacterial strains by producing intraspecies antagonistic effects.

2.      The larger the inhibition zone (no bacteria growing area) on the agar medium, means that the bacteriocin is effective on the pathogenic bacteria and vice versa.


3.      The production of bacteriocins, organic acids, free fatty acids, ammonia, diacetyl and hydrogen peroxide by lactic acid bacteria (LAB) promotes bacterial interference. These metabolites have been applied for many years to extend the shelf life of foods in food industry by enabling acidification that will inhibit the growth of spoilage agents. Besides that, proteinaceous bacteriocins produced by LAB supress the growth of pathogenic microorganisms.

4.      As for none inhibition zone exist result are because not enough Lactobacillus fermentum are being applied around the pathogenic bacteria. This is because without adequate numbers of Lactobacillus fermentum, the point of critical mass which is needed cannot occur and the bacteria will be unable to have the desired impact on the symptoms being treated.

Part 2: Determination Of Bacteriocin Activity Via Optical Density

1.      The optical density (OD) or called as scattering intensity is the measure of transmittance of an optical medium for a given wavelength. The higher the OD the lower the transmittance, the higher protection factor by a filter (e.g. goggles, viewing windows, etc.). This factor allows us to calculate the cell density from any measured OD. A spectrophotometer can be set at a wavelength of 420 – 660 nm. In this experiment, the OD600 is measured. Typically, this wavelength must be standardized and may need to be adjusted specifically to the material being tested. Different vegetative cells and bacterial spores may not have the same maximal absorbance wavelength.
2.      One arbitrary (AU) is known as the dilution factor of the extracellular extract that inhibited 50% of the spoilage or pathogenic bacteria growth and expressed as AU/mL.

Abs600 = Z. Thus, 50% of Z = Z/2
y = mx + c ; Thus, x = (y-c)/m
When y = Z/2, Thus x = (Z/2 - c)/m

3.      The positive control which showed the growth of bacteria without extracellular extract of lactic acid bacteria has been set up for each pathogenic bacteria. TheOD600 of the positive control was then measured in order for us to investigate whether there is inhibition of pathogenic bacteria activity by comparing the OD600 of the samples. If the OD600 of the sample is less than OD600 of the positive control, there will be inhibition of spoilage bacteria.

4.      Based on our result, LAB shows low inhibition activity on E.Coli. This might be due to we didn’t shake the bottle of bacteria culture before pipetting especially for the positive control. Therefore, the reading for positive control is lower than all the samples of different dilution.

CONCLUSION
Some of the microorganisms can synthesis certain substances that have antimicrobial effects. Bacteriocins produced by lactic acid bacteria (LAB) as bio preservatives against both Escherichia coli (E.coli) and Staphylococcus aureus. Lactic acid bacteria (LAB) also synthesize bacteriocins that have antimicrobial effects. The use of strains that produce multiple bacteriocins could be advantageous to limit the potential emergence of bacteriocin-resistant populations.

REFERENCE